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Species belonging to selected taxon:

Oryzias latipes



ABOUT THIS RECORD

ID: MNEST006665
species: Oryzias latipes
miRNA family: miR-1556
source: miRNEST

Taxonomy by NCBI:
Oryzias latipes Oryzias Oryziinae Adrianichthyidae Adrianichthyoidei Beloniformes Atherinomorpha Smegmamorpha Percomorpha Euacanthopterygii Acanthopterygii Holacanthopterygii Euacanthomorpha Acanthomorpha Ctenosquamata Eurypterygii Neoteleostei Neognathi Euteleostei Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTCAGGCTGGAAGTAGGAGTG

miRNA*
CATCTAGTCCAGTATGCTCA

mismatches: 5
bulges: 1

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pre-miRNA
AAAAAATGGAATTCAGGCTGGAAGTAGGAGTGAAACTGGCGCCGAAGGGACTCACGCAGACAAGCTGTTGACCTTCAAGCATCAGCCACATCTAGTCCAG
TATGCTCA
GTCCAGTG


dot-bracket secondary structure
......((((...((.((((((..((((.(((...((((.((.(((((...(((.((((.....))))))))))))..)).)))).))).)))).)))))
).))....
.))))...



SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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